miaaim

Nextflow User Guide / Tutorials

Installation
Quick Start
- prototype-001
Folder Structure
- input
- hdiprep
- hdireg
- docs
Workflows
Parameter Reference
- Nextflow
- HDIprep
- HDIreg
Tutorials
Configuration
Provenance
Contributing
- Adding Imaging Modalities
  - Importing New Modalities / Adding File Formats

MIAAIM in Python

Installation
Workflow Implementations in Python
Jupyter Notebook Zoo
API Guide

Background on MIAAIM

Background
Elastix Basics
- Registration Parameter Files (Elastix)
- Applying Transformations (Transformix)

Roadmap

MIAAIM Roadmap
- MIAAIM 0.0.1

Contributing

Contributing
- Adding Imaging Modalities
  - Importing New Modalities / Adding File Formats

FAQs

FAQs

Contact

Contact Information

Funding

Funding

License

License

Acknowledgements

Acknowledgements

miaaim

»
Python Module Index

Python Module Index

h


	h
	`hdiprep`
	`hdiprep.HDIprep.hdi_prep`
	`hdiprep.HDIprep.utils`
	`hdireg`
	`hdireg.HDIreg.elastix`
	`hdireg.HDIreg.transformix`
	`hdireg.HDIreg.utils`

© Copyright 2021, Joshua Hess.

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